PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G383700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 333aa    MW: 34635.3 Da    PI: 9.0403
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G383700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.35.3e-43106204199
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+q
  Sobic.003G383700.2.p 106 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQ 194
                           7**************************************************************************************** PP

                DUF260  90 lkaelallke 99 
                           l+++la++k 
  Sobic.003G383700.2.p 195 LQQDLARAKY 204
                           *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.729105206IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-43106202IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVLHKAPVSK GLFFFLCPPR LRALSLRASQ LGDDYAKCPG LLQARSLLLY TSFPGLLRSS  60
DSSSPATSTA SRRMASSVPA PSGSVITVAS SSSSAAAAAV CGTGSPCAAC KFLRRKCQPD  120
CVFAPYFPPD NPQKFVHVHR VFGASNVTKL LNELHPFQRE DAVNSLAYEA DMRLRDPVYG  180
CVGVISILQH NLRQLQQDLA RAKYELSKYQ AAAAASASTA APNGPQAMAE FIGNAMPNGA  240
HNFINIGHSA ALGSLGGSAT VFGQEQFANA QMLSRSYDGE PIARLGINGG YEFGYSTAMG  300
GSGAVSGLGT LGISPFLKSG TAGGDEKPSG GY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.54720.0pollen
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406810.0AY940681.1 Zea mays ASYMMETRIC LEAVES2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673457.11e-166PREDICTED: LOB domain-containing protein 6 isoform X4
SwissprotQ32SG31e-167LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLK3XL261e-165K3XL26_SETIT; Uncharacterized protein
STRINGSb03g042310.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-57LBD family protein